{ "_id": "6aca7d86fe5cc25786e8a24f", "Package": "semEff", "Type": "Package", "Title": "Automatic Calculation of Effects for Piecewise Structural\nEquation Models", "Version": "0.7.2", "Authors@R": "person(given = c(\"Mark\", \"V.\"), family = \"Murphy\", role = c(\"aut\", \n\"cre\"), email = \"murphymv@gmail.com\")", "Description": "Automatically calculate direct, indirect, and total\neffects for piecewise structural equation models, comprising\nlists of fitted models representing structured equations\n(Lefcheck, 2016 ). Confidence intervals are\nprovided via bootstrapping.", "URL": "https://murphymv.github.io/semEff/,\nhttps://github.com/murphymv/semEff,\nhttps://buymeacoffee.com/murphymv", "BugReports": "https://github.com/murphymv/semEff/issues", "VignetteBuilder": "knitr", "License": "GPL (>= 3)", "Encoding": "UTF-8", "LazyData": "true", "LazyDataCompression": "xz", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Language": "en-GB", "Config/pak/sysreqs": "cmake make libgsl0-dev", "Repository": "https://murphymv.r-universe.dev", "Date/Publication": "2024-09-13 00:34:04 UTC", "RemoteUrl": "https://github.com/murphymv/semeff", "RemoteRef": "HEAD", "RemoteSha": "3c59d74df4642d8b78bbadf7ef2b4fc870930863", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 16:56:31 UTC", "User": "root" }, "Author": "Mark V. Murphy [aut, cre]", "Maintainer": "Mark V. Murphy ", "_user": "murphymv", "_type": "src", "_file": "semEff_0.7.2.tar.gz", "_fileid": "https://r2.ropensci.org/779c074f3f01b7e2cc1eec111bdddced762624cbb245f9a31bd46f6be1100c81", "_filesize": 1305438, "_sha256": "779c074f3f01b7e2cc1eec111bdddced762624cbb245f9a31bd46f6be1100c81", "_expires": "2027-01-18T18:01:40.000Z", "_created": "2026-10-10T16:56:31.000Z", "_published": "2026-10-10T18:01:42.471Z", "_buildurl": "https://github.com/r-universe/murphymv/actions/runs/38069419755", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 114264485711, "time": 181, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11675749885" }, { "job": 114264485766, "time": 169, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11675674909" }, { "job": 114264485681, "time": 227, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11677942119" }, { "job": 114264485713, "time": 154, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11678041736" }, { "job": 114263691684, "time": 239, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11676565143" }, { "job": 114264485704, "time": 108, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11676695081" }, { "job": 114264485751, "time": 123, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11675994448" }, { "job": 114264485739, "time": 121, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11676550587" }, { "job": 114264485753, "time": 115, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11676247766" } ], "_upstream": "https://github.com/murphymv/semeff", "_commit": { "id": "3c59d74df4642d8b78bbadf7ef2b4fc870930863", "author": "Mark V. Murphy ", "committer": "Mark V. Murphy ", "message": "Update buymeacoffee.com button link in _pkgdown.yml\n", "time": 1726187644 }, "_maintainer": { "name": "Mark V. Murphy", "email": "murphymv@gmail.com", "login": "murphymv", "twitter": "@murphy_mv", "description": "Analyst | PhD Ecology | Research, data, stats, programming, AI.", "uuid": 28943056 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.6.0", "role": "Depends" }, { "package": "boot", "role": "Imports" }, { "package": "gsl", "role": "Imports" }, { "package": "lme4", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "markdown", "role": "Suggests" }, { "package": "piecewiseSEM", "version": "<= 2.3.0", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "murphymv", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 17, "_contributors": [ { "user": "murphymv", "count": 452, "uuid": 28943056 } ], "_userbio": { "uuid": 28943056, "type": "user", "name": "Mark Murphy", "followers": 10, "description": "Analyst | PhD Ecology | Research, data, stats, programming, AI." }, "_downloads": { "count": 7886, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/semEff" }, "_devurl": "https://github.com/murphymv/semeff", "_pkgdown": "https://murphymv.github.io/semEff/", "_searchresults": 53, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/semEff.html" ], "_homeurl": "https://github.com/murphymv/semeff", "_realowner": "murphymv", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2019-11-04" }, { "version": "0.2.0", "date": "2020-01-08" }, { "version": "0.2.1", "date": "2020-01-16" }, { "version": "0.3.0", "date": "2020-03-25" }, { "version": "0.4.0", "date": "2020-10-01" }, { "version": "0.5.0", "date": "2021-04-09" }, { "version": "0.6.0", "date": "2021-10-12" }, { "version": "0.6.1", "date": "2022-08-22" }, { "version": "0.7.2", "date": "2024-09-12" } ], "_exports": [ "avgEst", "bootCI", "bootEff", "getAllInd", "getData", "getDirEff", "getDirEffTable", "getEff", "getEffTable", "getFamily", "getIndEff", "getIndEffTable", "getMedEff", "getMedEffTable", "getTotEff", "getTotEffTable", "getX", "getY", "glt", "predEff", "pSapply", "R2", "rMapply", "RVIF", "sdW", "semEff", "stdEff", "varW", "VIF", "xNam" ], "_datasets": [ { "name": "shipley", "title": "Simulated Data from Shipley (2009)", "object": "shipley", "class": [ "data.frame" ], "fields": [ "site", "tree", "lat", "year", "Date", "DD", "Growth", "Survival", "Live" ], "rows": 1900, "table": true, "tojson": true }, { "name": "shipley.growth", "title": "Candidate Model Set from Shipley 'Growth' Model", "object": "shipley", "class": [ "list" ], "fields": [], "table": false, "tojson": false }, { "name": "shipley.sem", "title": "Hypothesised SEM from Shipley (2009)", "object": "shipley", "class": [ "list" ], "fields": [], "table": false, "tojson": false }, { "name": "shipley.sem.boot", "title": "Bootstrapped Estimates for Shipley SEM", "object": "shipley", "class": [ "list" ], "fields": [], "table": false, "tojson": false }, { "name": "shipley.sem.eff", "title": "Effects for Shipley SEM", "object": "shipley", "class": [ "semEff", "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "avgEst", "title": "Weighted Average of Model Estimates", "topics": [ "avgEst" ] }, { "page": "bootCI", "title": "Bootstrap Confidence Intervals", "topics": [ "bootCI" ] }, { "page": "bootEff", "title": "Bootstrap Effects", "topics": [ "bootEff" ] }, { "page": "getData", "title": "Get Model Data", "topics": [ "getData" ] }, { "page": "getEff", "title": "Get SEM Effects", "topics": [ "getAllInd", "getDirEff", "getDirEffTable", "getEff", "getEffTable", "getIndEff", "getIndEffTable", "getMedEff", "getMedEffTable", "getTotEff", "getTotEffTable" ] }, { "page": "getFamily", "title": "Get Model Error Distribution Family", "topics": [ "getFamily" ] }, { "page": "getX", "title": "Get Model Design Matrix", "topics": [ "getX" ] }, { "page": "getY", "title": "Get Model Response Variable", "topics": [ "getY" ] }, { "page": "glt", "title": "Generalised Link Transformation", "topics": [ "glt" ] }, { "page": "predEff", "title": "Predict Effects", "topics": [ "predEff" ] }, { "page": "print.bootCI", "title": "Print '\"bootCI\"' Objects", "topics": [ "print.bootCI" ] }, { "page": "print.semEff", "title": "Print '\"semEff\"' Objects", "topics": [ "print.semEff" ] }, { "page": "pSapply", "title": "Parallel 'sapply()'", "topics": [ "pSapply" ] }, { "page": "R2", "title": "R-squared", "topics": [ "R2" ] }, { "page": "rMapply", "title": "Recursive 'mapply()'", "topics": [ "rMapply" ] }, { "page": "RVIF", "title": "Root Variance Inflation Factors", "topics": [ "RVIF" ] }, { "page": "sdW", "title": "Weighted Standard Deviation", "topics": [ "sdW" ] }, { "page": "semEff", "title": "SEM Effects", "topics": [ "semEff" ] }, { "page": "shipley", "title": "Simulated Data from Shipley (2009)", "topics": [ "shipley" ] }, { "page": "shipley.growth", "title": "Candidate Model Set from Shipley 'Growth' Model", "topics": [ "shipley.growth" ] }, { "page": "shipley.sem", "title": "Hypothesised SEM from Shipley (2009)", "topics": [ "shipley.sem" ] }, { "page": "shipley.sem.boot", "title": "Bootstrapped Estimates for Shipley SEM", "topics": [ "shipley.sem.boot" ] }, { "page": "shipley.sem.eff", "title": "Effects for Shipley SEM", "topics": [ "shipley.sem.eff" ] }, { "page": "stdEff", "title": "Standardised Effects", "topics": [ "stdEff" ] }, { "page": "summary.semEff", "title": "Summarise SEM Effects", "topics": [ "summary.semEff" ] }, { "page": "varW", "title": "Weighted Variance", "topics": [ "varW" ] }, { "page": "VIF", "title": "Generalised Variance Inflation Factors", "topics": [ "VIF" ] }, { "page": "xNam", "title": "Get Model Term Names", "topics": [ "xNam" ] } ], "_readme": "https://github.com/murphymv/semeff/raw/HEAD/README.md", "_rundeps": [ "boot", "gsl", "lattice", "lme4", "MASS", "Matrix", "minqa", "nlme", "nloptr", "rbibutils", "Rcpp", "RcppEigen", "Rdpack", "reformulas" ], "_vignettes": [ { "source": "predicting-effects.Rmd", "filename": "predicting-effects.html", "title": "Predicting Effects", "engine": "knitr::rmarkdown", "headings": [ "References" ], "created": "2021-10-12 01:18:37", "modified": "2024-09-11 14:01:38", "commits": 2 }, { "source": "semEff.Rmd", "filename": "semEff.html", "title": "semEff", "engine": "knitr::rmarkdown", "headings": [ "References" ], "created": "2021-04-14 22:11:16", "modified": "2024-09-11 14:01:38", "commits": 4 } ], "_score": 6.851581563716268, "_indexed": true, "_nocasepkg": "semeff", "_universes": [ "murphymv" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.7.2", "date": "2026-10-10T16:58:59.000Z", "distro": "resolute", "commit": "3c59d74df4642d8b78bbadf7ef2b4fc870930863", "fileid": "https://r2.ropensci.org/b0af3407d545f98ed6b657d519310c55adb5be05583ade6b9f8144038b9eaf90", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/murphymv/actions/runs/38069419755" }, { "r": "4.6.1", "os": "linux", "version": "0.7.2", "date": "2026-10-10T16:58:53.000Z", "distro": "resolute", "commit": "3c59d74df4642d8b78bbadf7ef2b4fc870930863", "fileid": "https://r2.ropensci.org/fc03c8f5b009d735804b70d2fbc3482b0bdeca8a4a10e03f6f666d73238287a2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/murphymv/actions/runs/38069419755" }, { "r": "4.5.3", "os": "mac", "version": "0.7.2", "date": "2026-10-10T18:00:04.000Z", "commit": "3c59d74df4642d8b78bbadf7ef2b4fc870930863", "fileid": "https://r2.ropensci.org/5cd6d6018c8a546f786d45610406e64e3822cff18b3619d8c4e515c326b679b5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/murphymv/actions/runs/38069419755" }, { "r": "4.6.1", "os": "mac", "version": "0.7.2", "date": "2026-10-10T17:59:35.000Z", "commit": "3c59d74df4642d8b78bbadf7ef2b4fc870930863", "fileid": "https://r2.ropensci.org/1844247c6de3d8f70f7d997e84bece48c6c241da7fccd774c79c282d06c1b671", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/murphymv/actions/runs/38069419755" }, { "r": "4.6.0", "os": "wasm", "version": "0.7.2", "date": "2026-10-10T16:58:37.000Z", "commit": "3c59d74df4642d8b78bbadf7ef2b4fc870930863", "fileid": "https://r2.ropensci.org/c905ad67279c7d018ac4dd44a85195ed232fd1b16676821bdc4d677e72473534", "status": "success", "buildurl": "https://github.com/r-universe/murphymv/actions/runs/38069419755" }, { "r": "4.7.0", "os": "win", "version": "0.7.2", "date": "2026-10-10T16:57:50.000Z", "commit": "3c59d74df4642d8b78bbadf7ef2b4fc870930863", "fileid": "https://r2.ropensci.org/0b92765f5f5a1d01522f0684dc0b1aa7699b28b90935fc85fb625d40003c3566", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/murphymv/actions/runs/38069419755" }, { "r": "4.5.3", "os": "win", "version": "0.7.2", "date": "2026-10-10T16:57:57.000Z", "commit": "3c59d74df4642d8b78bbadf7ef2b4fc870930863", "fileid": "https://r2.ropensci.org/6f79d5acdf962c6e2d1a42c32ebc044c808e6c445c202ab150542e168637a4d6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/murphymv/actions/runs/38069419755" }, { "r": "4.6.1", "os": "win", "version": "0.7.2", "date": "2026-10-10T16:57:47.000Z", "commit": "3c59d74df4642d8b78bbadf7ef2b4fc870930863", "fileid": "https://r2.ropensci.org/29bec5c1b692cc66967950e48cda45859c27d2f9aa77cf13c2ddb1856abb201c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/murphymv/actions/runs/38069419755" } ] }